I add the inline pump after having a bout with some bad fuel. there was a good bit of water in the fuel and it after changing the filter , I drained the tank twice . the fuel i had was cloudy and when i let it sit , in the warm garage the fuel separated into three layers fuel , a cloudy tan waxy layer and water. my thinking in adding the pump was because the fuel was getting thicker in the colder weather making it harder to suck into the injection pump. I have fresh fuel in the tank now with the winter additives in it . I will bypass the new pump and change the filter again and get back to you. thank you for your help.
Water in the fuel is a SEVERE problem in a diesel.
You need to not just clean the tank (and the entire fuel system), but install a fuel-water separator system. This will probably be a bit problematic in a unibody rig (vertical space for a fuel/water filtration stack being hard to find.
I understand why you added the pump, but I think you just compounded the problem. You're forcing whatever water remains in the system into the motor. This is a problem for two reasons...
1- the Injection Pump (not a diesel tech but I can hum the tune, so I'm assuming there is one) has VERY precise tolerances... And is rust-prone. This will ruin the IP.
2-assuming you dodge 1, above.... Water does not compress. You shoot water into the cylinder, you may well discover you're spontaneously installing a window in the cylinder (ie, blow out the cylinder wall)